并行效率疑问
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谢谢你的建议，确实PCG+DIC 解p方程的效率有所提高，目前新的case还在run。
Time = 0.048 //576 cores Courant Number mean: 0.0211288 max: 0.859123 DILUPBiCG: Solving for Ux, Initial residual = 0.000456629, Final residual = 3.65897e-07, No Iterations 2 DILUPBiCG: Solving for Uy, Initial residual = 0.000477652, Final residual = 4.92182e-07, No Iterations 2 DILUPBiCG: Solving for Uz, Initial residual = 0.235746, Final residual = 6.0203e-08, No Iterations 3 DICPCG: Solving for p, Initial residual = 0.21036, Final residual = 0.0103945, No Iterations 676 time step continuity errors : sum local = 3.27749e-08, global = 2.74055e-11, cumulative = 2.44545e-08 DICPCG: Solving for p, Initial residual = 0.0069283, Final residual = 0.000342288, No Iterations 700 time step continuity errors : sum local = 1.71314e-09, global = -5.01474e-11, cumulative = 2.44043e-08 DICPCG: Solving for p, Initial residual = 0.000423809, Final residual = 2.08942e-05, No Iterations 723 time step continuity errors : sum local = 1.06217e-10, global = 5.3039e-13, cumulative = 2.44049e-08 DILUPBiCG: Solving for k, Initial residual = 0.0159443, Final residual = 3.974e-07, No Iterations 3 bounding k, min: -6.91417e-13 max: 0.0010178 average: 3.66373e-08 ExecutionTime = 1327.45 s ClockTime = 1333 sTime = 0.048 //288 core Courant Number mean: 0.0211368 max: 0.860415 DILUPBiCG: Solving for Ux, Initial residual = 0.000472671, Final residual = 1.86206e-07, No Iterations 2 DILUPBiCG: Solving for Uy, Initial residual = 0.000470667, Final residual = 1.50369e-07, No Iterations 2 DILUPBiCG: Solving for Uz, Initial residual = 0.227442, Final residual = 1.43158e-08, No Iterations 3 GAMG: Solving for p, Initial residual = 0.14952, Final residual = 0.00727048, No Iterations 3 time step continuity errors : sum local = 3.21523e-08, global = 1.32072e-09, cumulative = -2.68714e-11 GAMG: Solving for p, Initial residual = 0.0105374, Final residual = 0.000436311, No Iterations 17 time step continuity errors : sum local = 1.38004e-09, global = 2.02486e-11, cumulative = -6.62288e-12 GAMG: Solving for p, Initial residual = 0.000588406, Final residual = 9.97916e-08, No Iterations 102 time step continuity errors : sum local = 2.47533e-13, global = 3.66548e-17, cumulative = -6.62284e-12 DILUPBiCG: Solving for k, Initial residual = 0.0159342, Final residual = 3.67721e-08, No Iterations 3 bounding k, min: -1.80015e-12 max: 0.00101339 average: 3.66396e-08 ExecutionTime = 1824.48 s ClockTime = 1831 s scalarTransport write: DILUPBiCG: Solving for s, Initial residual = 0.00981188, Final residual = 7.3898e-09, No Iterations 2我把decompose的方式用得和288 cores 那个case 类似
hierarchicalCoeffs //576 case { n (32 9 2); delta 0.001; order xyz; }hierarchicalCoeffs //288 case { n (16 9 2); delta 0.001; order xyz; } -
@cfd-china
你说得很对。从hierarchical到scotch是我要考虑的一个方向。不过由于decompose的时间花费，现在我在处理一些solver上的选择，这样可以不decompse。这个表格是我现在做过的一些case。
我的目标计算时间是1个小时算出0.5second。
#case p-solver #核心数 decompose 方法 数值精度 求解器 1小时后，模拟时间 湍流模型 #PISO 矫正次数 1 GAMG+symGaussSeidel 576 hiera (32 9 2) -6 pisoFoam - LES-kqE 3 2 - - - - - - - - 3 PCG+DIC 576 hiera (32 9 2) -6 pisoFoam 0.133 LES-WALE 3 4 PCG+DIC 576 hiera (32 9 2) -6 pisoFoam 0.129 LES-kqE 3 5 PCG+DIC 576 hiera (32 9 2) -6 pisoFoam 0.125 LES-TKE 3 6 PCG+DIC 576 hiera (32 9 2) -7 pisoFoam 0.125 LES-TKE 3 7 8 9 GAMG+smootherGaussSeidel 576 hiera (4 4 36) -7 pisoFoam 0.015(2914s) LES-TKE 3 10 GAMG+smootherGaussSeidel 288 hiera (16 9 2) -6 pisoFoam 0.171 LES-TKE 2 11 GAMG+smootherGaussSeidel 288 hiera (16 9 2) -6 pisoFoam 0.132 LES-TKE 3 -
$ checkMesh
Create time Create polyMesh for time = 0 Time = 0 Mesh stats points: 34617600 faces: 102296400 internal faces: 100743600 cells: 33840000 faces per cell: 6 boundary patches: 5 point zones: 0 face zones: 0 cell zones: 0 Overall number of cells of each type: hexahedra: 33840000 prisms: 0 wedges: 0 pyramids: 0 tet wedges: 0 tetrahedra: 0 polyhedra: 0 Checking topology... Boundary definition OK. Cell to face addressing OK. Point usage OK. Upper triangular ordering OK. Face vertices OK. Number of regions: 1 (OK). Checking patch topology for multiply connected surfaces... Patch Faces Points Surface topology INLET 28200 28848 ok (non-closed singly connected) OUTLET 28200 28848 ok (non-closed singly connected) CYLINDER 56400 57600 ok (non-closed singly connected) FRONT_CYC 720000 721200 ok (non-closed singly connected) BACK_CYC 720000 721200 ok (non-closed singly connected) Checking geometry... Overall domain bounding box (-20 -20 0) (20 20 3.07458) Mesh has 3 geometric (non-empty/wedge) directions (1 1 1) Mesh has 3 solution (non-empty) directions (1 1 1) Boundary openness (9.81794e-16 9.03981e-18 9.17862e-15) OK. Max cell openness = 3.5214e-16 OK. Max aspect ratio = 229.976 OK. Minimum face area = 7.49334e-07. Maximum face area = 0.022353. Face area magnitudes OK. Min volume = 4.90189e-08. Max volume = 0.00146226. Total volume = 3861.2. Cell volumes OK. Mesh non-orthogonality Max: 4.97612e-05 average: 0 Non-orthogonality check OK. Face pyramids OK. Max skewness = 0.006519 OK. Coupled point location match (average 4.44139e-16) OK. Mesh OK. End -
@random_ran 不知道你运行之前是否 renumberMesh？用了这个之后能减少求解方程时的迭代次数。
另外，还可以尝试 PCG + GAMG，用 GAMG当 PCG 的 smoother。
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@random_ran 你好，我想问一下，我运用scotch方法剖分了网格，并行运算时提示网格出现下述问题是咋回事：
大概提示是找不到法向量，我对应到程序中是这个地方：
103 if (mag(pn) < VSMALL) 104 { 105 FatalErrorInFunction 106 << "Cannot determine normal vector from patches." 107 << abort(FatalError); 108 } 109 else 110 { 111 pn /= mag(pn); 112 } 113大概意思就是分块的面积太小了，找不到法向量？
用simple方法提示的错误不一样，大意几个地方网格的交界面有问题。
可是不管哪个方法，我都检查了网格，checkMesh没问题，单核也可以计算。
我怀疑是不是加密的关系，一般感觉加密的level到3就容易出问题，我这个就到了3，请问你遇到过类似的情况吗？
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@random_ran 多谢建议，不过确实都没有任何问题。。。
等过一段我贴上来：）
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好贴子，马住。另外推荐一个连接：
http://nscc-gz.cn/newsdetail.html?6151 -
你是在哪个超算中心跑的算例？用的是什么规格的机器
